Concepts and tools for the responsible scientist https://www.reproducible-research.de/ 2026-11-10T17:07:16+00:00 https://www.reproducible-research.de/ https://www.reproducible-research.de/_media/wiki/logo.png text/html 2023-05-13T12:13:02+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/footer?rev=1683979982&do=diff ---------- <https://www.aspecd.de/> • <https://www.labinform.de/> <https://www.trepr.de/> • <https://www.cwepr.de/> • <https://www.uvvispy.de/> • <https://www.spinpy.de/> • <https://www.fitpy.de/> text/html 2023-04-26T17:00:54+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/resources/literature/index?rev=1682528454&do=diff ====== Literature ====== Books and articles Books Reproducible research Victoria Stodden, Friedrich Leisch, and Rodger D. Peng (Editors) Implementing Reproducible Research. Boca Raton: CRC Press, 2014. Anthony Scopatz and Kathryn D. Huff text/html 2023-04-24T19:39:57+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/blog/index?rev=1682365197&do=diff Blog Some (more) thoughts about reproducible research. text/html 2023-02-17T21:18:18+00:00 Anonymous (anonymous@undisclosed.example.com) https://www.reproducible-research.de/?image=wiki%3Adokuwiki.svg&ns=wiki&rev=1676668698&tab_details=history&media_do=diff&do=media <img src="https://www.reproducible-research.de/_media/wiki/dokuwiki.svg?w=500&amp;h=500&amp;tok=30100b" alt="dokuwiki.svg" loading="lazy" width="500" height="500" /> text/html 2023-02-17T21:08:00+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/concepts/sections?rev=1676668080&do=diff Sections Abstraction Modularisation Automation Metadata Dataset Open formats Self-documenting Recipes Unique IDs text/html 2023-02-17T21:05:55+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/concepts/automation/index?rev=1676667955&do=diff Automation Delegation enables focussing on the intellectual aspects Civilization advances by extending the number of important operations which we can perform without thinking about them.--- ← Modularisation Concepts → text/html 2023-02-17T21:05:44+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/concepts/automatisation/index?rev=1676667944&do=diff text/html 2023-02-17T21:05:29+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/concepts/modularisation/index?rev=1676667929&do=diff Modularisation Independent units allow for step-wise inplementation * Research spans multiple platforms and media. * Usually, there is no spare time for developing larger-scale applications. * A modular approach allows to implement independent units step-wise and according to current needs. text/html 2023-02-17T21:05:19+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/concepts/index?rev=1676667919&do=diff Concepts How to achieve fully reproducible research? Research, and particularly reproducible research, is highly complex. Therefore, we need strategies to deal with the essential complexity and reduce the accidential complexity. On a high level text/html 2022-03-30T07:44:10+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/index?rev=1648626250&do=diff e Reproducible Research Good scientific practice requires research to be reproducible. However, most research involving any kind of software and computers does not meet these reqirements -- and can therefore not be considered scientific. These pages are about some text/html 2020-09-29T14:30:25+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/tools/vcs/index?rev=1601389825&do=diff Version control Versioning and archiving of processing routines * Version control has a liberating effect on software development. * Version control is an essential prerequisite to unequivocally identify the version of a routine employed. text/html 2020-09-29T14:27:42+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/requirements/references/index?rev=1601389662&do=diff References Stable and unequivocal references to datasets, samples, ... * Analysis nearly always requires comparing multiple datasets. * This requires stable and uneqivocal references to datasets, samples, and alike. * Hint: A path on the file system is not long-term stable. text/html 2019-03-12T06:50:41+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/?image=wiki%3Afavicon.ico&ns=wiki&rev=1552373441&tab_details=history&media_do=diff&do=media <img src="https://www.reproducible-research.de/_media/wiki/favicon.ico?w=500&amp;h=500&amp;tok=08840d" alt="favicon.ico" loading="lazy" width="500" height="500" /> text/html 2019-03-12T06:50:41+00:00 till (till@undisclosed.example.com) https://www.reproducible-research.de/?image=wiki%3Alogo.png&ns=wiki&rev=1552373441&tab_details=history&media_do=diff&do=media <img src="https://www.reproducible-research.de/_media/wiki/logo.png?w=500&amp;h=500&amp;tok=763bf8" alt="logo.png" loading="lazy" width="500" height="500" />