Reproducible-Research.de

Concepts and tools for the responsible scientist

User Tools

Site Tools

You are here: Reproducible Research » Concepts
concepts:index

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
concepts:index [2019/01/28 22:59] – tillconcepts:index [2023/02/17 22:05] (current) – till
Line 1: Line 1:
 ~~NOTOC~~ ~~NOTOC~~
  
-{{fa>stack-overflow?48&align=right}} ====== Concepts ======+{{fa>stack-overflow?48&align=right}} 
 +~~NOTOC~~ 
 + 
 + ====== Concepts ======
  
 //How to achieve fully reproducible research?// //How to achieve fully reproducible research?//
  
-Research, and particularly reproducible research, is highly complex. Therefore, we need strategies to deal with the essential complexity and reduce the accidential complexity. On a high level, there are three essential concepts. +Research, and particularly reproducible research, is highly complex. Therefore, we need strategies to deal with the essential complexity and reduce the accidential complexity. On a **high level**, there are three essential concepts.
- +
-\\+
  
 <WRAP group centeralign> <WRAP group centeralign>
 <WRAP third column> <WRAP third column>
 +<WRAP box round>
 [[.:abstraction:|{{fa>filter?48}}]] [[.:abstraction:|{{fa>filter?48}}]]
  
Line 16: Line 18:
  
 [[.:abstraction:|A mental model of data processing and analysis]] [[.:abstraction:|A mental model of data processing and analysis]]
 +</WRAP>
 </WRAP> </WRAP>
  
 <WRAP third column> <WRAP third column>
 +<WRAP box round>
 [[.:modularisation:|{{fa>cubes?48}}]] [[.:modularisation:|{{fa>cubes?48}}]]
  
 ===== Modularisation ===== ===== Modularisation =====
  
-[[.:modularisation:|Independent units allow for step-wise inplementation]]+[[.:modularisation:|Independent units allow for step-wise implementation]] 
 +</WRAP>
 </WRAP> </WRAP>
  
 <WRAP third column> <WRAP third column>
-[[.:automatisation:|{{fa>steam?48}}]]+<WRAP box round> 
 +[[.:automation:|{{fa>steam?48}}]]
  
-===== Automatisation =====+===== Automation =====
  
-[[.:automatisation:|Delegation enables focussing on the intellectual aspects]]+[[.:automation:|Enables to focus on the important aspects]] 
 +</WRAP>
 </WRAP> </WRAP>
 </WRAP> </WRAP>
Line 38: Line 45:
 \\ \\
  
-On a low(er) level, there are a number of concepts or best practices that have emerged over the years in the author's lab. More details how to implement these concepts are given in the [[:tools:|{{fa>wrench}}]] [[:tools:|tools]] section.+On a **low(er) level**, there are a number of concepts or best practices that have emerged over the years in the author's lab. More details how to implement these concepts are given in the [[:tools:|{{fa>wrench}}]] [[:tools:|tools]] section.
  
- 
-\\ 
  
 <WRAP group centeralign> <WRAP group centeralign>
 <WRAP third column> <WRAP third column>
 +<WRAP box round>
 [[.:metadata:|{{fa>info-circle?48}}]] [[.:metadata:|{{fa>info-circle?48}}]]
  
Line 50: Line 56:
  
 [[.:metadata:|Information available during data acquisition]] [[.:metadata:|Information available during data acquisition]]
 +</WRAP>
 </WRAP> </WRAP>
  
 <WRAP third column> <WRAP third column>
 +<WRAP box round>
 [[.:dataset:|{{fa>gears?48}}]] [[.:dataset:|{{fa>gears?48}}]]
  
Line 58: Line 66:
  
 [[.:dataset:|Unit of (numeric) data and accompanying metadata]] [[.:dataset:|Unit of (numeric) data and accompanying metadata]]
 +</WRAP>
 </WRAP> </WRAP>
  
 <WRAP third column> <WRAP third column>
 +<WRAP box round>
 [[.:openformats:|{{fa>unlock?48}}]] [[.:openformats:|{{fa>unlock?48}}]]
  
Line 66: Line 76:
  
 [[.:openformats:|Open formats for data and metadata]] [[.:openformats:|Open formats for data and metadata]]
 +</WRAP>
 </WRAP> </WRAP>
 </WRAP> </WRAP>
Line 72: Line 83:
 <WRAP group centeralign> <WRAP group centeralign>
 <WRAP third column> <WRAP third column>
 +<WRAP box round>
 [[.:selfdocumenting:|{{fa>edit?48}}]] [[.:selfdocumenting:|{{fa>edit?48}}]]
  
 ===== Self-documenting ===== ===== Self-documenting =====
  
-[[.:selfdocumenting:|Self-documenting processing and analysis routines]]+[[.:selfdocumenting:|Logging processing and analysis routines]] 
 +</WRAP>
 </WRAP> </WRAP>
  
 <WRAP third column> <WRAP third column>
 +<WRAP box round>
 [[.:recipes:|{{fa>list-ul?48}}]] [[.:recipes:|{{fa>list-ul?48}}]]
  
Line 85: Line 99:
  
 [[.:recipes:|Formalised instructions for complex tasks]] [[.:recipes:|Formalised instructions for complex tasks]]
 +</WRAP>
 </WRAP> </WRAP>
  
 <WRAP third column> <WRAP third column>
 +<WRAP box round>
 [[.:ids:|{{fa>id-badge?48}}]] [[.:ids:|{{fa>id-badge?48}}]]
  
Line 93: Line 109:
  
 [[.:ids:|Unique and stable IDs for samples, datasets, ...]] [[.:ids:|Unique and stable IDs for samples, datasets, ...]]
 +</WRAP>
 </WRAP> </WRAP>
 </WRAP> </WRAP>
  
  
concepts/index.1548712755.txt.gz · Last modified: 2019/01/28 22:59 by till